Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
dnaG | nac-2 | rrnAC1720 | rrnAC0214 | dnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Unknown; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. | 0.746 |
dnaG | nadM | rrnAC1720 | rrnAC1913 | dnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Nicotinamide-nucleotide adenylyltransferase. | 0.538 |
dnaG | rrnAC0210 | rrnAC1720 | rrnAC0210 | dnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Putative RNA binding protein. | 0.575 |
dnaG | rrnAC0258 | rrnAC1720 | rrnAC0258 | dnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Unknown. | 0.754 |
dnaG | rrnAC0629 | rrnAC1720 | rrnAC0629 | dnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Unknown. | 0.710 |
dnaG | rrnAC0857 | rrnAC1720 | rrnAC0857 | dnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Unknown; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family. | 0.675 |
dnaG | tiaS | rrnAC1720 | rrnAC2518 | dnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Unknown; ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA. | 0.478 |
galE4 | rrnAC0856 | rrnAC0855 | rrnAC0856 | UDP-glucose 4-epimerase. | Unknown. | 0.596 |
galE4 | rrnAC0857 | rrnAC0855 | rrnAC0857 | UDP-glucose 4-epimerase. | Unknown; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family. | 0.792 |
nac-2 | dnaG | rrnAC0214 | rrnAC1720 | Unknown; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. | dnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.746 |
nac-2 | rrnAC0210 | rrnAC0214 | rrnAC0210 | Unknown; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. | Putative RNA binding protein. | 0.734 |
nac-2 | rrnAC0258 | rrnAC0214 | rrnAC0258 | Unknown; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. | Unknown. | 0.711 |
nac-2 | rrnAC0629 | rrnAC0214 | rrnAC0629 | Unknown; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. | Unknown. | 0.662 |
nac-2 | rrnAC0857 | rrnAC0214 | rrnAC0857 | Unknown; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. | Unknown; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family. | 0.699 |
nac-2 | tiaS | rrnAC0214 | rrnAC2518 | Unknown; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. | Unknown; ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA. | 0.502 |
nadM | dnaG | rrnAC1913 | rrnAC1720 | Nicotinamide-nucleotide adenylyltransferase. | dnaG; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.538 |
nadM | rrnAC0210 | rrnAC1913 | rrnAC0210 | Nicotinamide-nucleotide adenylyltransferase. | Putative RNA binding protein. | 0.589 |
nadM | rrnAC0258 | rrnAC1913 | rrnAC0258 | Nicotinamide-nucleotide adenylyltransferase. | Unknown. | 0.553 |
nadM | rrnAC0629 | rrnAC1913 | rrnAC0629 | Nicotinamide-nucleotide adenylyltransferase. | Unknown. | 0.567 |
nadM | rrnAC0857 | rrnAC1913 | rrnAC0857 | Nicotinamide-nucleotide adenylyltransferase. | Unknown; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family. | 0.790 |
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