STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frtFerritin; Belongs to the Dps family. (179 aa)    
Predicted Functional Partners:
sodA
Superoxide dismutase [Mn] 2; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.
 
  
 0.768
rrnAC1307
Putative transcriptional regulator.
  
    0.661
htlB
HTR-like protein.
   
    0.637
prk1
Protein kinase.
   
    0.632
prkA
Kinase anchor protein.
   
    0.632
yurF
ABC transporter ATP-binding protein.
     
 0.588
pgi
Glucose-6-phosphate isomerase.
     
 0.563
cbiA1
Cobyrinic acid ac-diamide synthase.
 
   
 0.535
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
   
  
 0.534
hemC
Porphobilinogen deaminase.
  
    0.481
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.