Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rrnAC1069Unknown. (437 aa)    
Predicted Functional Partners:
prk1
Protein kinase.
 
  
 0.999
prkA
Kinase anchor protein.
 
  
 0.999
spoVR
Stage V sporulation protein R-like.
 
  
 0.999
rrnAC1071
Unknown.
       0.527
rrnAC1073
Unknown.
       0.468
htlB
HTR-like protein.
  
    0.430
rrnAC0819
2-domain regulatory protein.
  
    0.408
ddeA
Dodecin.
   
    0.401
yafB-2
Oxidoreductase aldo/keto reductase family.
  
    0.401
yafB-3
Oxidoreductase aldo/keto reductase family.
  
    0.401
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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