Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cofD | rrnAC1158 | rrnAC0051 | rrnAC1158 | Sugar transferase; Catalyzes the transfer of the phosphoenolpyruvate moiety from enoylpyruvoyl-2-diphospho-5'-guanosine (EPPG) to 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) with the formation of dehydro coenzyme F420-0 and GMP. | Protein phosphatase 2C like phosphatase. | 0.755 |
cofD | sun | rrnAC0051 | rrnAC0628 | Sugar transferase; Catalyzes the transfer of the phosphoenolpyruvate moiety from enoylpyruvoyl-2-diphospho-5'-guanosine (EPPG) to 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) with the formation of dehydro coenzyme F420-0 and GMP. | tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.491 |
ndk | pdhB1 | rrnAC0106 | rrnAC2956 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | Pyruvate dehydrogenase. | 0.601 |
ndk | pdhB2 | rrnAC0106 | rrnB0199 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | Pyruvate dehydrogenase. | 0.601 |
ndk | ppiB1 | rrnAC0106 | rrnAC3303 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | Peptidyl-prolyl cis-trans isomerase slr1251. | 0.880 |
ndk | prsA | rrnAC0106 | rrnAC2630 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P). | 0.631 |
ndk | rrnAC1158 | rrnAC0106 | rrnAC1158 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | Protein phosphatase 2C like phosphatase. | 0.685 |
pdhB1 | ndk | rrnAC2956 | rrnAC0106 | Pyruvate dehydrogenase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | 0.601 |
pdhB1 | pdhB2 | rrnAC2956 | rrnB0199 | Pyruvate dehydrogenase. | Pyruvate dehydrogenase. | 0.901 |
pdhB1 | prsA | rrnAC2956 | rrnAC2630 | Pyruvate dehydrogenase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P). | 0.951 |
pdhB1 | rrnAC1158 | rrnAC2956 | rrnAC1158 | Pyruvate dehydrogenase. | Protein phosphatase 2C like phosphatase. | 0.797 |
pdhB2 | ndk | rrnB0199 | rrnAC0106 | Pyruvate dehydrogenase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | 0.601 |
pdhB2 | pdhB1 | rrnB0199 | rrnAC2956 | Pyruvate dehydrogenase. | Pyruvate dehydrogenase. | 0.901 |
pdhB2 | prsA | rrnB0199 | rrnAC2630 | Pyruvate dehydrogenase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P). | 0.951 |
pdhB2 | rrnAC1158 | rrnB0199 | rrnAC1158 | Pyruvate dehydrogenase. | Protein phosphatase 2C like phosphatase. | 0.797 |
pknA1 | ppiB1 | rrnAC1159 | rrnAC3303 | Serine/threonine-protein kinase PknA. | Peptidyl-prolyl cis-trans isomerase slr1251. | 0.942 |
pknA1 | rrnAC1157 | rrnAC1159 | rrnAC1157 | Serine/threonine-protein kinase PknA. | Putative DNA-binding protein with a phosphopeptide binding motif. | 0.690 |
pknA1 | rrnAC1158 | rrnAC1159 | rrnAC1158 | Serine/threonine-protein kinase PknA. | Protein phosphatase 2C like phosphatase. | 0.995 |
pknA1 | rrnAC1160 | rrnAC1159 | rrnAC1160 | Serine/threonine-protein kinase PknA. | Von Willebrand factor type A like metal binding protein. | 0.903 |
ppiB1 | ndk | rrnAC3303 | rrnAC0106 | Peptidyl-prolyl cis-trans isomerase slr1251. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | 0.880 |
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