STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
troRIron-dependent repressor. (139 aa)    
Predicted Functional Partners:
nifU2
NifU-like domain protein.
       0.470
zurM
ABC transporter permease protein.
  
  
 0.456
ycdH
Adhesion protein.
  
  
 0.450
sec11a
Signal sequence peptidase.
   
    0.443
sec11b
Signal sequence peptidase.
   
    0.443
rrnAC2982
Unknown.
   
    0.443
zurA
Zinc uptake system ATP-binding protein ZurA.
  
  
 0.442
sui1
Protein translation factor SUI1-like; Belongs to the SUI1 family.
 
 
   0.403
yprA4
ATP-dependent helicase.
  
 
   0.400
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.