STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppC2Oligopeptide transport system permease protein OppC. (345 aa)    
Predicted Functional Partners:
oppD1
Oligopeptide ABC transporter ATPase component.
  
 0.998
dppF
Dipeptide ABC transporter ATP-binding.
 
 0.994
oppF
Oligopeptide ABC transporter ATP-binding protein.
 
 0.993
oppD2
Oligopeptide ABC transporter ATPase component.
  
 0.992
oppB
Oligopeptide ABC transporter permease protein.
  
 0.989
ykfD
Oligopeptide ABC transporter ATP-binding.
 
 0.966
oppA
Oligopeptide ABC transporter solute-binding protein.
 
 
 0.957
dppB1
Dipeptide ABC transporter permease.
  
 0.940
dppB
Dipeptide ABC transporter permease.
 
  
 0.933
dppA
Dipeptide ABC transporter dipeptide-binding.
 
 
 0.868
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.