Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
arcB | arg1 | rrnAC2672 | rrnAC0453 | Ornithine carbamoyltransferase. | Arginase; Belongs to the arginase family. | 0.930 |
arcB | arg2 | rrnAC2672 | rrnAC0383 | Ornithine carbamoyltransferase. | Arginase; Belongs to the arginase family. | 0.930 |
arcB | argB2 | rrnAC2672 | rrnAC2676 | Ornithine carbamoyltransferase. | Acetylglutamate kinase; Involved in both the arginine and lysine biosynthetic pathways. Phosphorylates the LysW-bound precursors glutamate (for arginine biosynthesis), respectively alpha-aminoadipate (for lysine biosynthesis); Belongs to the acetylglutamate kinase family. LysZ subfamily. | 0.987 |
arcB | argC | rrnAC2672 | rrnAC2678 | Ornithine carbamoyltransferase. | N-acetyl-gamma-glutamyl-phosphate reductase; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. LysY sub-subfamily. | 0.993 |
arcB | argD | rrnAC2672 | rrnAC2675 | Ornithine carbamoyltransferase. | Acetylornithine aminotransferase; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. LysJ subfamily. | 0.980 |
arcB | argE-2 | rrnAC2672 | rrnAC2095 | Ornithine carbamoyltransferase. | Acetylornithine deacetylase. | 0.920 |
arcB | argG | rrnAC2672 | rrnAC2683 | Ornithine carbamoyltransferase. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.999 |
arcB | argH | rrnAC2672 | rrnAC2681 | Ornithine carbamoyltransferase. | Argininosuccinate lyase. | 0.951 |
arcB | carB | rrnAC2672 | rrnAC3360 | Ornithine carbamoyltransferase. | Carbamoylphosphate synthetase large subunit; Belongs to the CarB family. | 0.987 |
arcB | gltCP | rrnAC2672 | rrnAC2674 | Ornithine carbamoyltransferase. | Glutamate carboxypeptidase; Catalyzes the release of L-lysine from [LysW]-gamma-L-lysine and the release of L-ornithine from [LysW]-L-ornithine. | 0.988 |
arg1 | arcB | rrnAC0453 | rrnAC2672 | Arginase; Belongs to the arginase family. | Ornithine carbamoyltransferase. | 0.930 |
arg1 | arg2 | rrnAC0453 | rrnAC0383 | Arginase; Belongs to the arginase family. | Arginase; Belongs to the arginase family. | 0.903 |
arg1 | argC | rrnAC0453 | rrnAC2678 | Arginase; Belongs to the arginase family. | N-acetyl-gamma-glutamyl-phosphate reductase; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. LysY sub-subfamily. | 0.487 |
arg1 | argD | rrnAC0453 | rrnAC2675 | Arginase; Belongs to the arginase family. | Acetylornithine aminotransferase; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. LysJ subfamily. | 0.713 |
arg1 | argE-2 | rrnAC0453 | rrnAC2095 | Arginase; Belongs to the arginase family. | Acetylornithine deacetylase. | 0.917 |
arg1 | argH | rrnAC0453 | rrnAC2681 | Arginase; Belongs to the arginase family. | Argininosuccinate lyase. | 0.831 |
arg1 | gltCP | rrnAC0453 | rrnAC2674 | Arginase; Belongs to the arginase family. | Glutamate carboxypeptidase; Catalyzes the release of L-lysine from [LysW]-gamma-L-lysine and the release of L-ornithine from [LysW]-L-ornithine. | 0.944 |
arg2 | arcB | rrnAC0383 | rrnAC2672 | Arginase; Belongs to the arginase family. | Ornithine carbamoyltransferase. | 0.930 |
arg2 | arg1 | rrnAC0383 | rrnAC0453 | Arginase; Belongs to the arginase family. | Arginase; Belongs to the arginase family. | 0.903 |
arg2 | argC | rrnAC0383 | rrnAC2678 | Arginase; Belongs to the arginase family. | N-acetyl-gamma-glutamyl-phosphate reductase; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. LysY sub-subfamily. | 0.467 |
page 1 of 5