STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rad24aRad24a plus uvrB domain. (589 aa)    
Predicted Functional Partners:
recJ3
Putative exonuclease recJ-like.
  
    0.718
rrnAC0979
Putative nuclease.
  
    0.699
rrnAC3501
Transcription regulator.
 
     0.582
rrnAC2259
Unknown.
  
     0.581
rrnAC3181
Unknown.
  
     0.567
dpd
Dihydropyrimidine dehydrogenase.
  
     0.565
rrnAC2757
Unknown.
       0.554
rrnAC1165
Unknown; Belongs to the UPF0212 family.
  
     0.523
rrnAC0441
Unknown; Belongs to the UPF0212 family.
  
     0.511
arsR
Transcription regulator.
  
     0.501
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.