STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
matE2Multi antimicrobial extrusion drug/sodium antiporters; MATE. (419 aa)    
Predicted Functional Partners:
tbpE
TATA-box binding protein E; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
   
  
 0.751
fdfT
Farnesyl-diphosphate farnesyltransferase.
   
 
 0.722
crtB
Phytoene synthase.
   
 
 0.722
trp2
ABC transporter ATP-binding protein.
  
  
 0.697
nosF-3
ABC transporter ATP-binding protein.
  
  
 0.697
trp-11
ABC transporter ATP-binding protein.
  
  
 0.697
gapB
Glyceraldehyde 3-phosphate dehydrogenase.
  
  
 0.658
gapA
Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.658
rrnAC2777
DNA binding protein putative transcriptional regulator.
     
 0.563
rrnAC0049
ABC transporter ATP-binding domain.
  
  
 0.541
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.