STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpcEb2-hydroxyhepta-24-diene-1,7-dioate isomerase. (238 aa)    
Predicted Functional Partners:
malE1
Maltose ABC transporter maltose-binding protein.
      
 0.678
dgoA2
Mandelate racemase/muconate lactonizing enzyme family protein.
  
  
 0.663
malG
Maltose ABC transporter permease protein.
      
 0.599
pfk4
1-phosphofructokinase.
     
 0.597
gfo6
Xylose dehydrogenase; NADP-dependent D-xylose dehydrogenase involved in the degradation of D-xylose, a major component of hemicelluloses such as xylan. In addition to D-xylose, oxidizes D-ribose at similar kinetic constants, whereas D-glucose is oxidized with about 70-fold lower catalytic efficiency.
     
 0.596
htpX3
Heat shock protein X.
  
  
 0.553
rrnAC1339
Fumarylacetoacetate hydrolase family protein; FAA.
 
   
 0.542
aldY2
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.511
aldY4
Aldehyde dehydrogenase.
  
 
 0.511
aldY2-2
Aldehyde dehydrogenase.
  
 
 0.511
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.