STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrnAC3318Unknown; Involved in DNA damage repair. (429 aa)    
Predicted Functional Partners:
cdc6e
Orc / cell division control protein 6.
  
     0.697
nusA2
Transcription termination factor NusA; Participates in transcription termination. Belongs to the NusA family.
  
     0.685
cdc6i
Cell division control protein 6 homolog 6; Involved in regulation of DNA replication.
  
     0.675
cdc6g
Cell division control protein 6; Involved in regulation of DNA replication.
  
     0.671
cdc6d
Cell division control protein 6-like; Involved in regulation of DNA replication.
  
     0.671
cdc6b
Cell division control protein 6 homolog 1; Involved in regulation of DNA replication.
  
     0.665
rrnAC0258
Unknown.
 
     0.664
rrnAC0629
Unknown.
  
     0.655
cdc6a
Cell division control protein 6 homolog 1; Involved in regulation of DNA replication.
  
     0.655
cca
tRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.
  
     0.645
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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