STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPN_02069L, D-carboxypeptidase A (in murein recycling). (345 aa)    
Predicted Functional Partners:
ydbK
Putative oxidoreductase, Fe-S subunit.
    
  0.765
ldcA
L, D-carboxypeptidase A (in murein recycling).
  
     0.762
dacB
D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin-binding protein 4.
 
  
 0.674
ycjI
Putative carboxypeptidase.
    
 0.595
mpl
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
    
 0.593
dacA
D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5; Belongs to the peptidase S11 family.
    
 0.529
dacC
D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6; Belongs to the peptidase S11 family.
    
 0.529
amiC
N-acetylmuramoyl-L-alanine amidase.
    
 0.515
yciO
Hypothetical protein; Belongs to the SUA5 family.
  
     0.457
KPN_02070
TonB protein.
       0.457
Your Current Organism:
Klebsiella pneumoniae MGH78578
NCBI taxonomy Id: 272620
Other names: K. pneumoniae subsp. pneumoniae MGH 78578, Klebsiella pneumoniae MCG 78578, Klebsiella pneumoniae str. MCG 78578, Klebsiella pneumoniae subsp. pneumoniae ATCC 700721, Klebsiella pneumoniae subsp. pneumoniae MGH 78578, Klebsiella pneumoniae subsp. pneumoniae str. MGH 78578, Klebsiella pneumoniae subsp. pneumoniae strain MGH 78578
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