Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LBA0058Putative phage DEAD box family helicase. (944 aa)    
Predicted Functional Partners:
LBA0060
Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.
     
 0.856
LBA0871
DNA alkylation repair enzyme; Potential frameshift to 870.
     
 0.855
LBA0883
Hypothetical protein; Reverse transcriptase homolog.
      
 0.855
LBA1019
Putative mucus binding protein; Potential frameshift to 1016.
     
 0.848
LBA1020
Putative mucus binding protein.
     
 0.809
mutT
Putative mutator protein; MutT.
 
    0.784
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.776
dinG
ATP-dependent DNA helicase; 3'-5' exonuclease.
  
 0.662
gadC
Glutamategamma-aminobutyrate antiporter; GadC; COG0531 Amino acid transporters.
   
   0.635
rpoB
RNA-polymerase DNA-directed beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.616
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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