STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA0082Hypothetical protein. (265 aa)    
Predicted Functional Partners:
yycH
Hypothetical protein.
  
  
 0.932
yycI
Hypothetical protein.
  
  
 0.932
LBA0079
Putative histidine kinase; VicK.
  
  
 0.920
LBA0078
VicR; COG0745 Response regulators conserved isting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
  
 0.877
htrA
Putative heat shock related serine protease; HtrA; Serine protease do-like HtrA.
  
  
 0.838
LBA0746
COG0745 Response regulators conserved isting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
  
 0.562
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.534
LBA0428
COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain.
  
    0.503
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.