STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA0100Hypothetical protein; Belongs to the HesB/IscA family. (135 aa)    
Predicted Functional Partners:
LBA0101
Putative glycerophosphodiester phosphodiesterase.
       0.762
LBA0099
Hypothetical protein.
       0.682
LBA0157
Hypothetical protein.
  
     0.636
LBA0102
Hypothetical protein.
       0.618
LBA0098
Cation transporter.
 
     0.582
LBA1748
Hypothetical protein.
  
     0.554
LBA0108
Predicted hydrolase.
 
     0.496
LBA0422
Thioredoxin reductase; Belongs to the thioredoxin family.
   
    0.491
LBA0109
Hypothetical protein; COG1403 Restriction endonuclease.
 
     0.480
LBA0352
Hypothetical protein.
  
     0.454
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.