Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LBA0140COG5438 Predicted multitransmembrane protein. (261 aa)    
Predicted Functional Partners:
LBA0139
COG5438 Predicted multitransmembrane protein.
 
    0.973
LBA0141
COG0657 Esterase-lipase.
       0.775
LBA0142
Hypothetical protein.
       0.773
LBA0138
Hypothetical protein.
 
     0.627
folC
FolC; COG0285 Folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family.
   
    0.554
ddl
D-alanine-d-alanine ligase; Cell wall formation.
       0.536
LBA0819
Putative ADP-ribose pyrophosphatase; MutT.
   
    0.492
LBA0433
Hypothetical protein.
 
     0.471
LBA0093
Putative ABC transporter permease component.
 
     0.426
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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