STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asnHAsn synthetase; COG0367 Asparagine synthase (glutamine-hydrolyzing). (649 aa)    
Predicted Functional Partners:
pyrB
Aspartate carbamoyltransferase; PyrB; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
 
 0.980
LBA1817
COG1794 Aspartate racemase; Belongs to the aspartate/glutamate racemases family.
 
  
 0.970
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
 
 0.935
asnA
Aspartate-ammonia ligase; COG2502 Asparagine synthetase A.
   
 
 0.926
ansA
L-asparaginase.
    
 0.919
LBA1695
Aspartate aminotransferase.
  
 
 0.915
LBA0159
Hypothetical protein; COG3919 Predicted ATP-grasp enzyme.
 
     0.913
LBA0850
COG0527 Aspartokinases; Belongs to the aspartokinase family.
  
 
 0.875
LBA1215
Aspartokinase; ThrA2; COG0527 Aspartokinases; Belongs to the aspartokinase family.
  
 
 0.875
LBA0157
Hypothetical protein.
       0.646
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.