STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA0208Hypothetical protein; Belongs to the SOS response-associated peptidase family. (199 aa)    
Predicted Functional Partners:
LBA0211
Hypothetical protein.
 
     0.644
LBA1340
Putative V-type sodium ATP synthase subunit.
  
     0.562
LBA0209
COG0180 Tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.553
LBA0210
DCMP deaminase; COG2131 Deoxycytidylate deaminase.
       0.538
LBA0029
Putative integrase; Hypothetical protein Ljo_1749; Belongs to the 'phage' integrase family.
   
  
 0.458
LBA0325
Integrase; Belongs to the 'phage' integrase family.
   
  
 0.458
LBA0484
Integrase; Belongs to the 'phage' integrase family.
   
  
 0.458
LBA0764
Integrase; Belongs to the 'phage' integrase family.
   
  
 0.458
LBA0893
Integrase; Phage related protein; Belongs to the 'phage' integrase family.
   
  
 0.458
xerD
Integrase-recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
  
 0.458
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.