STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA0244COG1396 Predicted transcriptional regulators. (321 aa)    
Predicted Functional Partners:
LBA0242
Hypothetical protein.
 
     0.687
LBA1371
Putative transcriptional regulator phage-related; Prophage ps3 protein 01.
 
   
 0.568
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.552
LBA1607
Phosphatidylserine decarboxylase precursor; Belongs to the phosphatidylserine decarboxylase family.
  
     0.473
LBA1128
COG3619 Predicted membrane protein.
  
     0.472
LBA1565
COG3077 DNA-damage-inducible protein J.
 
  
 0.454
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.