STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA0338Putative integral membrane protein; Transport protein. (252 aa)    
Predicted Functional Partners:
LBA0339
Phosphoglycerate mutase; COG0406 Fructose-2,6-bisphosphatase; Belongs to the phosphoglycerate mutase family.
       0.688
LBA0340
Cation efflux protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
       0.587
LBA0337
Hypothetical protein; 2-haloalkanoic acid dehalogenase.
       0.574
pheS
phenylalanyl-tRNA synthetase, beta subunit; SyfB; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.540
LBA0336
4-methyl-5(b-hydroxyethyl)-thiazole monophosphatebiosynthesis; COG0693 putative intracellular protease-amidase.
       0.505
htrA
Putative heat shock related serine protease; HtrA; Serine protease do-like HtrA.
   
 
 0.502
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.485
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.439
LBA1899
Putative transcriptional regulator; Family; ArsR; COG0607 Rhodanese-related sulfurtransferase.
  
  
 0.423
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.