STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
repB-2Putative replication initiator protein. (360 aa)    
Predicted Functional Partners:
ftsK-3
Putative DNA segregation ATPase; FtsK; hypothetical protein.
  
  
 0.690
rbsB
D-ribose-binding protein precursor; RbsB.
   
  
 0.554
oppB
Permease protein; Oligopeptide ABC transporter.
  
 
 0.542
oppB-2
Oligopeptide transport protein; OppB.
  
 
 0.542
ftsK
Putative cell division protein; FtsK; hypothetical protein.
  
  
 0.541
ftsK-2
Putative cell division protein; FtsK; hypothetical protein.
  
  
 0.541
oppC
Permease protein (oligopeptide ABC transporter); OppC.
  
  
 0.540
oppC-2
Oligopeptide ABC transporter permease protein; OppC.
  
  
 0.540
recF
DNA repair and genetic recombination protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
     
 0.528
marR
COG1846 transcriptional regulators.
     
 0.528
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.