Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LBA0484Integrase; Belongs to the 'phage' integrase family. (400 aa)    
Predicted Functional Partners:
ftsK-2
Putative cell division protein; FtsK; hypothetical protein.
 
   
 0.720
ftsK
Putative cell division protein; FtsK; hypothetical protein.
 
   
 0.707
LBA0594
ABC transporter ATP-binding and membrane spanning permease.
 
     0.668
LBA0087
Putative protease.
 
    0.602
LBA0485
Hypothetical protein.
       0.556
LBA1810
Hypothetical protein.
 
    0.507
LBA0671
Competence protein; ComFC; COG1040 Predicted amidophosphoribosyltransferases.
  
    0.501
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
    0.490
LBA0208
Hypothetical protein; Belongs to the SOS response-associated peptidase family.
  
    0.489
purR
Repressor; PurR.
  
    0.479
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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