STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msmEABC transporter sugar-binding protein; MsmE. (431 aa)    
Predicted Functional Partners:
msmF
ABC transporter permease; MsmF.
 
 0.995
msmG
ABC transporter permease; MsmG.
 
 
 0.995
bfrA
Fructosidase; BfrA.
 
   
 0.964
msmK
ABC transporter nucleotide binding protein; MsmK; Belongs to the ABC transporter superfamily.
  
 
 0.920
LBA1443
Msm operon regulatory protein; MsmRII.
 
  
 0.811
gtfA
Sucrose phosphorylase; GtfA.
  
  
 0.787
LBA1643
Sugar ABC transporter.
 
 
 0.776
LBA1440
ABC transporter permease; MsmGII.
 
 
 0.752
LBA1441
ABC transporter transporter permease; MsmFII.
 
 0.749
LBA1644
Sugar ABC transporter permease protein.
 
 0.745
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.