STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA0545Hypothetical protein; COG1573 Uracil-DNA glycosylase. (195 aa)    
Predicted Functional Partners:
LBA0544
Transcriptional regulator; COG0664 cAMP-binding protein -catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
  
    0.608
LBA0542
Putative heavy-metal-transporting ATPase; Potential frameshift to 541; COG2608 Copper chaperone.
       0.602
LBA0543
Hypothetical protein.
       0.602
cadA
Cadmium-transporting ATPase; Potential frameshift to 542; CadA; COG2217 Cation transport ATPase.
       0.566
LBA0388
Putative glycoprotein endopeptidase.
  
    0.514
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
  
    0.457
LBA0341
Pga mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
  
    0.457
LBA0546
Aspartate racemase.
       0.423
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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