STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA0585Glycerol-3-phosphate ABC transporter. (432 aa)    
Predicted Functional Partners:
LBA1643
Sugar ABC transporter.
 
 0.933
LBA1644
Sugar ABC transporter permease protein.
 
 
 0.928
LBA1645
Multiple sugar-binding ABC-transporter ATPase protein; Belongs to the ABC transporter superfamily.
 
 
 0.896
msmG
ABC transporter permease; MsmG.
 
 0.878
msmF
ABC transporter permease; MsmF.
 
 
 0.874
LBA1642
Hypothetical protein.
 
     0.798
LBA1441
ABC transporter transporter permease; MsmFII.
 
 
 0.766
LBA0858
Penicillin-binding protein.
      
 0.757
LBA1497
Hypothetical protein.
      
 0.716
LBA1440
ABC transporter permease; MsmGII.
  
 
 0.700
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.