STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA0603Response regulator bacteriocinproduction-related; AbpR. (265 aa)    
Predicted Functional Partners:
LBA0602
Bacteriocin production-related histidine kinase.
 
 
 0.999
LBA1799
Histidine kinase; AbpK.
 
  
 0.985
LBA1798
Response regulator; AbpR.
  
  
0.921
lytR
LytR; COG1316 transcriptional regulator.
      
 0.628
LBA1430
Putative histidine protein kinase.
  
  
 0.618
plnI-2
Immunity protein; PlnI.
       0.579
lisR
Two-component system regulator; COG0745 Response regulators conserved isting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
     
 0.569
lisK
Two-component sensor histidine kinase.
  
  
 0.566
LBA0079
Putative histidine kinase; VicK.
     
 0.552
LBA0601
Serine protease.
       0.507
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.