STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA0671Competence protein; ComFC; COG1040 Predicted amidophosphoribosyltransferases. (231 aa)    
Predicted Functional Partners:
LBA0670
Competence protein; ComFA; ComF1.
 
  
 0.963
LBA0735
Competence protein; ComGB.
 
  
 0.821
LBA0839
Competence protein; ComEC.
  
  
 0.801
yvyD
Putative phosphate starvation inducible protein stressrelated; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.768
LBA0669
Hypothetical protein; YvyE.
  
    0.766
LBA0980
DNA processing protein chainA; SMF family.
  
 
 0.734
LBA0838
Competence protein; ComEA.
  
  
 0.667
LBA0715
Hypothetical protein.
 
     0.619
radC
RadC; DNA repair protein RadC; Belongs to the UPF0758 family.
  
    0.617
LBA0144
COG1820 N-acetylglucosamine-6-phosphate deacetylase.
  
    0.588
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.