STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA0864Hypothetical protein. (497 aa)    
Predicted Functional Partners:
LBA0861
Polyferredoxin.
     
 0.818
LBA0863
Hypothetical protein.
       0.631
LBA1539
Hypothetical protein.
      
 0.565
LBA0045
Sugar transporter.
  
  
 0.550
AsnC
AsnRS; COG0017 Aspartyl-asparaginyl-tRNA synthetases; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
  
 0.537
rplD
50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
  
  
 0.534
LBA1426
Hypothetical protein.
      
 0.530
LBA0865
COG1957 Inosine-uridine nucleoside N-ribohydrolase.
      
 0.529
LBA0046
Hypothetical protein; isoleucyl-tRNA synthetase.
      
 0.528
cdpA
Cell separation protein; CdpA; surface layer protein.
      
 0.528
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.