STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA0888Hypothetical protein. (198 aa)    
Predicted Functional Partners:
LBA0447
Phosphoglycerol transferase.
      
 0.760
repA
Putative temperature-sensitive replication protein; RepA; metalloprotease, insulinase family.
      
 0.757
LBA0977
Na(+)-H(+) antiporter.
  
     0.593
LBA0887
Hypothetical protein.
       0.585
LBA1808
Hypothetical protein.
  
     0.573
LBA1229
Hypothetical protein; Transcriptional regulator.
  
     0.537
eno
2-phosphoglycerate dehydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
      
 0.529
treB
Trehalose PTS II ABC; COG1263 Phosphotransferase system IIC components, glucose-maltose-N-acetylglucosamine-specific.
  
     0.520
LBA1823
Hypothetical protein.
  
     0.493
plnI-2
Immunity protein; PlnI.
  
     0.439
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.