STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA0921ABC transporter ATP binding protein. (566 aa)    
Predicted Functional Partners:
LBA0920
ABC transporter permease protein.
 
 0.996
LBA0922
COG4720 Predicted membrane protein.
  
 0.988
ecfT
ABC transporter permease; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 0.936
LBA0093
Putative ABC transporter permease component.
  
 
 0.725
LBA0576
Hypothetical protein.
  
  
 0.622
gidA-2
Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
     
 0.539
LBA1274
Cyclopropane-fatty-acyl-phospholipid synthase.
     
 0.536
LBA0923
Hypothetical protein.
       0.534
oppD
ATP binding protein; Oligopept. ABC transporter; Belongs to the ABC transporter superfamily.
  
  
0.533
oppD-2
Oligopeptide ABC transporter ATP-binding protein; OppD; Belongs to the ABC transporter superfamily.
  
  
0.533
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.