Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LBA1007COG2240 Pyridoxal-pyridoxine-pyridoxamine kinase; Belongs to the pyridoxine kinase family. (282 aa)    
Predicted Functional Partners:
LBA1008
Hypothetical protein.
 
     0.953
LBA1006
Penicillin-binding protein.
       0.636
LBA1010
Secreted protein.
       0.522
LBA0617
ATP-dependent RNA helicase, DEAD-DEAH box.
    
 0.453
pheS
phenylalanyl-tRNA synthetase, beta subunit; SyfB; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.451
aapA
Amino acid permease; AapA.
      
 0.446
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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