Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
treBTrehalose PTS II ABC; COG1263 Phosphotransferase system IIC components, glucose-maltose-N-acetylglucosamine-specific. (643 aa)    
Predicted Functional Partners:
treR
Trehalose operon transcriptional repressor; COG2188 transcriptional regulators.
 
  
 0.985
ptsH
Phosphocarrier protein HPr; PthP; COG1925 Phosphotransferase system, HPr-related protein.
  
 0.978
scrA
Sucrose PTS transporter.
 
 
0.972
LBA1707
Beta-glucoside permease.
 
 
0.971
LBA0725
COG1263 Phosphotransferase system IIC components, glucose-maltose-N-acetylglucosamine-specific.
 
 
0.970
LBA1478
PTS enzyme IIABC.
 
 
0.970
LBA1705
Sucrose PTS, EIIBC.
 
 
0.970
LBA0606
PTS system, arbutin-like IIBC component.
 
 
0.965
treC
Trehalose 6-P hydrolase.
 
  
 0.960
fruA
PTS system, fructose-specific enzyme II.
  
  
 0.951
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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