STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
treRTrehalose operon transcriptional repressor; COG2188 transcriptional regulators. (241 aa)    
Predicted Functional Partners:
treB
Trehalose PTS II ABC; COG1263 Phosphotransferase system IIC components, glucose-maltose-N-acetylglucosamine-specific.
 
  
 0.985
treC
Trehalose 6-P hydrolase.
 
  
 0.980
LBA1443
Msm operon regulatory protein; MsmRII.
  
  
 0.521
LBA0144
COG1820 N-acetylglucosamine-6-phosphate deacetylase.
  
  
 0.477
scrA
Sucrose PTS transporter.
 
  
 0.476
LBA1610
Hypothetical protein; 4-carboxymuconolactone decarboxylase.
  
    0.462
LBA0725
COG1263 Phosphotransferase system IIC components, glucose-maltose-N-acetylglucosamine-specific.
  
  
 0.404
LBA1478
PTS enzyme IIABC.
  
  
 0.404
LBA1705
Sucrose PTS, EIIBC.
  
  
 0.404
LBA1707
Beta-glucoside permease.
  
  
 0.404
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.