Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lysR-3Putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (288 aa)    
Predicted Functional Partners:
licT-2
Transcriptional antiterminator LicT.
    
 
 0.773
licT-3
COG3711 transcriptional antiterminator.
    
 
 0.773
LBA0018
Hypothetical protein.
      
 0.691
LBA0019
Hypothetical protein.
      
 0.691
LBA1025
Oxidoreductase aldo-keto reductase family.
 
     0.685
LBA1103
Putative flavodoxin; Potential frameshift to 1105; Flavodoxin.
 
   
 0.645
LBA1026
Oxidoreductase aldo-keto reductase family.
 
     0.616
lysR-9
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.615
lysR-4
Putative transcriptional regulator.
  
     0.585
pyrR
Pyrimidine operon regulator protein; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant; Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily.
  
  
 0.576
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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