Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LBA1049Putative 4-oxalomesaconate hydratase. (304 aa)    
Predicted Functional Partners:
LBA1048
Putative phosphoglycerate mutase.
       0.773
ltrA
COG4292 Predicted membrane protein.
 
     0.567
LBA1226
Hypothetical Cytosolic protein.
 
     0.555
LBA1047
Thiol peroxidase tpx; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
       0.516
LBA1285
Hypothetical protein.
 
     0.417
LBA0559
Putative ABC transporter ATP-binding and permease component; Potential frameshift to 560.
 
    0.413
LBA1799
Histidine kinase; AbpK.
  
    0.403
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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