STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1063Hypothetical protein. (67 aa)    
Predicted Functional Partners:
LBA0433
Hypothetical protein.
  
  
 0.805
LBA1087
Cysteine synthase; Potential frameshift to 1088.
  
  
 0.555
LBA1088
Cysteine synthase; Potential frameshift to 1087; COG0031 Cysteine synthase.
  
  
 0.555
LBA1238
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
  
 0.555
LBA1064
Phosphorylase; COG2820 Uridine phosphorylase.
       0.545
LBA1065
Phosphoglycerate mutase.
       0.524
LBA1066
COG2820 Uridine phosphorylase.
       0.502
LBA1067
COG2820 Uridine phosphorylase.
       0.502
LBA1062
Putative multidrug efflux permease.
       0.492
LBA1068
Putative HAD superfamily hydrolase.
  
    0.484
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.