STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1172COG1737 transcriptional regulators. (279 aa)    
Predicted Functional Partners:
LBA1176
Putative dehydrogenase; Potential frameshift to 1175.
 
     0.806
LBA1577
Transcriptional regulator.
  
     0.750
LBA1174
Ribose 5-phosphate.
 
   
 0.709
LBA1175
Putative dehydrogenase; Potential frameshift to 1176.
 
     0.677
LBA0607
Putative transcriptional regulator.
  
     0.570
LBA1173
Hypothetical protein.
       0.538
fruA
PTS system, fructose-specific enzyme II.
    
 0.517
murQ
Putative glucokinase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
  
 0.482
scrA
Sucrose PTS transporter.
  
  
 0.463
LBA0725
COG1263 Phosphotransferase system IIC components, glucose-maltose-N-acetylglucosamine-specific.
  
  
 0.463
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.