STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gntR-6Transcriptional regulator; GntR. (124 aa)    
Predicted Functional Partners:
LBA1188
ABC transporter ATP binding protein.
 
     0.959
LBA1187
Hypothetical protein.
 
     0.881
LBA1186
Hypothetical protein.
       0.774
LBA1184
Hypothetical protein.
       0.773
LBA0246
Daunorubicin resistance protein.
  
  
 0.650
gntR-2
Transcriptional regulator.
 
  
 0.491
LBA0740
Putative modification methylase; COG0827 Adenine-specific DNA methylase.
   
    0.471
LBA1939
ABC transporter ATP binding protein.
  
  
 0.432
pepT
Amino tripeptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
       0.413
LBA0117
Putative transcriptional regulator; Family; Sir2.
  
    0.412
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.