Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LBA1277ABC transporter ATP binding and permease protein. (588 aa)    
Predicted Functional Partners:
LBA1276
ABC transporter ATP binding and permease protein.
 
  
 
0.962
LBA0111
Putative glutamate ATP binding protein.
     
0.900
pstB1
Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
     
0.900
pstB2
ABC transporter phosphate, ATPase component; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
     
0.900
metN
ABC transporter ATP binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
     
0.899
LBA1045
Glutamine ABC transporter ATP-binding protein.
     
0.899
LBA1499
ABC transporter; Potential frameshift to 1500.
 
     
0.899
LBA1876
ABC transporter ATP-binding and membrane spanning protein.
 
    
0.851
msmK-2
Multiple sugar-binding ABC transport system; MsmK; Belongs to the ABC transporter superfamily.
     
0.778
glnQ-2
Glutamine ABC transporter ATP-binding protein; GlnQ.
     
0.709
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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