Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppD-2Oligopeptide ABC transporter ATP-binding protein; OppD; Belongs to the ABC transporter superfamily. (343 aa)    
Predicted Functional Partners:
oppC-2
Oligopeptide ABC transporter permease protein; OppC.
 0.999
oppB-2
Oligopeptide transport protein; OppB.
 0.999
oppC
Permease protein (oligopeptide ABC transporter); OppC.
 
 0.998
oppF-2
Oligopeptide ABC transporter (ATP-binding protein); OppF; Belongs to the ABC transporter superfamily.
 
 
0.995
oppB
Permease protein; Oligopeptide ABC transporter.
 
 0.992
oppA-4
Oligopeptide ABC trasporter substrate binding protein; OppA.
 
 0.991
oppA-3
Oligopeptide ABC trasporter substrate binding protein; OppA.
 
 0.988
oppA-7
Oligopeptide ABC trasporter substrate binding protein; OppA.
 
 0.984
LBA1772
Zinc ABC transporter ATPase protein.
     
0.894
oppF
ATP binding protein (oligopeptide ABC transporter); OppF; Belongs to the ABC transporter superfamily.
 
  
0.826
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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