Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LBA1174 | LBA1315 | LBA1174 | LBA1315 | Ribose 5-phosphate. | Ribulose-5-phosphate 3-epimerase. | 0.947 |
LBA1174 | LBA1489 | LBA1174 | LBA1489 | Ribose 5-phosphate. | Transketolase, alpha subunit; Similar to transketolase. | 0.909 |
LBA1174 | LBA1490 | LBA1174 | LBA1490 | Ribose 5-phosphate. | Transketolase, beta subunit; Similar to transketolase. | 0.909 |
LBA1174 | LBA1973 | LBA1174 | LBA1973 | Ribose 5-phosphate. | 6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. | 0.928 |
LBA1174 | rpiA | LBA1174 | LBA0588 | Ribose 5-phosphate. | Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.975 |
LBA1314 | LBA1315 | LBA1314 | LBA1315 | COG1564 Thiamine pyrophosphokinase. | Ribulose-5-phosphate 3-epimerase. | 0.885 |
LBA1314 | LBA1317 | LBA1314 | LBA1317 | COG1564 Thiamine pyrophosphokinase. | Serine-threonine protein kinase. | 0.882 |
LBA1314 | LBA1319 | LBA1314 | LBA1319 | COG1564 Thiamine pyrophosphokinase. | rRNA methylase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.867 |
LBA1314 | fmt | LBA1314 | LBA1321 | COG1564 Thiamine pyrophosphokinase. | methionyl-tRNA formyltransferase FMT; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.869 |
LBA1314 | rsgA | LBA1314 | LBA1316 | COG1564 Thiamine pyrophosphokinase. | Hypothetical protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.988 |
LBA1315 | LBA1174 | LBA1315 | LBA1174 | Ribulose-5-phosphate 3-epimerase. | Ribose 5-phosphate. | 0.947 |
LBA1315 | LBA1314 | LBA1315 | LBA1314 | Ribulose-5-phosphate 3-epimerase. | COG1564 Thiamine pyrophosphokinase. | 0.885 |
LBA1315 | LBA1317 | LBA1315 | LBA1317 | Ribulose-5-phosphate 3-epimerase. | Serine-threonine protein kinase. | 0.915 |
LBA1315 | LBA1319 | LBA1315 | LBA1319 | Ribulose-5-phosphate 3-epimerase. | rRNA methylase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.928 |
LBA1315 | LBA1489 | LBA1315 | LBA1489 | Ribulose-5-phosphate 3-epimerase. | Transketolase, alpha subunit; Similar to transketolase. | 0.997 |
LBA1315 | LBA1490 | LBA1315 | LBA1490 | Ribulose-5-phosphate 3-epimerase. | Transketolase, beta subunit; Similar to transketolase. | 0.969 |
LBA1315 | LBA1973 | LBA1315 | LBA1973 | Ribulose-5-phosphate 3-epimerase. | 6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. | 0.953 |
LBA1315 | fmt | LBA1315 | LBA1321 | Ribulose-5-phosphate 3-epimerase. | methionyl-tRNA formyltransferase FMT; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.920 |
LBA1315 | rpiA | LBA1315 | LBA0588 | Ribulose-5-phosphate 3-epimerase. | Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.947 |
LBA1315 | rsgA | LBA1315 | LBA1316 | Ribulose-5-phosphate 3-epimerase. | Hypothetical protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.986 |
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