STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1352Lysin; Potential frameshift to 1351; COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase). (155 aa)    
Predicted Functional Partners:
LBA1351
Lysin; Potential frameshift to 1352.
   
 0.986
LBA0660
Putative protease; COG0612 Predicted Zn-dependent peptidases.
 
     0.504
LBA0661
Protease; COG0612 Predicted Zn-dependent peptidases.
 
     0.499
LBA1350
Putative alpha-beta superfamily hydrolase; CinII.
       0.497
LBA1348
Kanamycin kinase; COG3231 Aminoglycoside phosphotransferase; Belongs to the aminoglycoside phosphotransferase family.
       0.494
LBA1349
COG4907 Predicted membrane protein.
       0.494
xerD-2
Putative integrase-recombinase; XerD; hypothetical protein; Belongs to the 'phage' integrase family.
  
    0.472
LBA1008
Hypothetical protein.
  
     0.457
LBA1229
Hypothetical protein; Transcriptional regulator.
  
     0.455
LBA1428
Hypothetical protein.
  
     0.409
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.