STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1357ABC transporter ATP binding and permease protein. (527 aa)    
Predicted Functional Partners:
LBA1358
ABC transporter ATP binding and permease protein.
 
    
0.804
LBA1135
Macrolide-efflux protein.
 
     0.520
LBA1359
Hypothetical protein.
 
    0.496
LBA0574
ABC transporter ATP-binding and permease protein.
  
0.474
LBA0432
COG0584 Glycerophosphoryl diester phosphodiesterase.
 
    0.472
plnG
ABC transporter; PlnG.
 
 
 
0.440
LBA1862
Hypothetical protein; COG1396 Predicted transcriptional regulators.
  
     0.436
LBA0515
Hypothetical protein.
   
 0.428
LBA1585
ABC transporter ATP-binding protein.
 
0.425
LBA1058
Hypothetical protein.
 
  0.423
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.