STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1388Hypothetical protein; COG0702 Predicted nucleoside-diphosphate-sugar epimerases. (215 aa)    
Predicted Functional Partners:
LBA0476
Prophage Lp2 protein 4.
   
    0.491
LBA1520
COG1733 Predicted transcriptional regulators.
  
  
 0.490
LBA0128
Hypothetical protein; COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain.
  
    0.469
LBA0017
Putative general stress response; COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family.
  
    0.458
LBA0873
COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family.
  
    0.458
LBA0396
oxalyl-CoA decarboxylase; COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome); Belongs to the TPP enzyme family.
   
    0.414
poxB
Pyruvate oxidase; COG0028 Thiamine pyrophosphate-requiring enzymes acetolactate synthase, pyruvate dehydrogenase (cytochrome); Belongs to the TPP enzyme family.
   
    0.414
LBA0100
Hypothetical protein; Belongs to the HesB/IscA family.
  
     0.411
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.