STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1417Hypothetical protein. (170 aa)    
Predicted Functional Partners:
LBA1415
Hypothetical protein.
 
    0.976
LBA1416
Glycosyl transferase.
 
    0.959
LBA1414
Hypothetical protein; COG2200 FOG EAL domain.
 
    0.794
LBA0171
Glycosyltransferase.
 
    0.645
LBA1413
Regulator components; COG2199 FOG GGDEF domain.
 
     0.638
LBA1418
NADH-dependent oxidoreductase.
 
     0.558
LBA0173
Uncharacterized conserved membrane protein.
  
     0.464
ydaM
Putative cellulose synthase; Potential frameshift to 106; YdaM.
 
    0.445
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.