STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1601Putative cell surface protein. (229 aa)    
Predicted Functional Partners:
vanY
Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
  
 0.762
nnrD
Putative sugar kinase of P-loop ATPase superfamily; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.
       0.563
LBA0170
Putative 6-pyruvoyl-tetrahydropterin synthase.
     
 0.544
LBA0171
Glycosyltransferase.
      
 0.539
LBA1476
Putative cellobiose phosphotransferase.
     
 0.534
LBA0173
Uncharacterized conserved membrane protein.
      
 0.529
LBA1655
RecA protein (Recombinase A).
      
 0.529
LBA1656
Hypothetical protein.
     
 0.529
pspC
Surface protein PspC.
     
 0.525
argS
ArgS; COG0018 Arginyl-tRNA synthetase.
       0.432
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.