STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1614Putative transcriptional regulator. (138 aa)    
Predicted Functional Partners:
LBA1613
Hypothetical protein.
      0.974
LBA1348
Kanamycin kinase; COG3231 Aminoglycoside phosphotransferase; Belongs to the aminoglycoside phosphotransferase family.
  
     0.719
LBA1634
Surface protein; Rlp.
  
  
 0.713
LBA1612
Fibrinogen-binding protein.
 
  
 0.685
fmtB
FmtB; FmtB protein.
 
     0.677
LBA1097
Hypothetical protein.
  
     0.666
LBA1696
Aspartate alanine antiporter.
 
     0.647
LBA1633
Surface protein.
  
  
 0.596
LBA0247
ABC transporter.
 
   
 0.538
LBA0367
Putative receptor; COG0679 Predicted permeases.
 
     0.523
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.