STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1628Hypothetical protein. (202 aa)    
Predicted Functional Partners:
LBA1627
Ribosomal-protein-alanine N-acetyltransferase.
 
     0.844
LBA0645
Hypothetical protein.
  
     0.622
LBA1629
COG0657 Esterase-lipase.
       0.541
plcR
Putative regulator; PlcR; hypothetical protein.
     
 0.532
LBA0444
COG0438 Glycosyltransferase.
 
  
 0.499
LBA0156
Hypothetical protein.
  
     0.491
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.465
LBA0445
COG0438 Glycosyltransferase.
 
  
 0.449
LBA0112
Putative glutamine ABC transporter.
 
     0.419
LBA0637
Hypothetical protein.
  
     0.409
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.