STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspCSurface protein PspC. (685 aa)    
Predicted Functional Partners:
kpyK
Pyruvate kinase; COG3848 Phosphohistidine swiveling domain; Belongs to the pyruvate kinase family.
   
    0.942
LBA1655
RecA protein (Recombinase A).
     
 0.839
LBA1810
Hypothetical protein.
  
     0.770
LBA0110
Hypothetical protein.
  
    0.761
LBA1604
Hypothetical protein.
      
 0.758
LBA1079
Putative cell surface protein.
 
   
 0.706
LBA1656
Hypothetical protein.
  
   
 0.688
LBA0171
Glycosyltransferase.
  
  
 0.603
LBA1740
Putative membrane protein.
 
  
 0.595
LBA1051
Unknown hydrophobic protein.
  
     0.590
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.