Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
marR-2Transcriptional regulator. (151 aa)    
Predicted Functional Partners:
LBA1664
Acetyltransferase.
   
 0.979
LBA1911
Putative cell surface hydrolase.
      
 0.702
LBA1661
COG3212 Predicted membrane protein.
 
     0.638
rpoE
RNA polymerase delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
      
 0.573
LBA1662
COG3212 Predicted membrane protein.
       0.559
rbsR
Ribose operon repressor.
   
  
 0.514
rbsR-2
Putative ribose operon repressor; RbsR.
   
  
 0.514
ftsK
Putative cell division protein; FtsK; hypothetical protein.
     
 0.510
ftsK-2
Putative cell division protein; FtsK; hypothetical protein.
     
 0.510
ftsK-3
Putative DNA segregation ATPase; FtsK; hypothetical protein.
     
 0.510
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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